Refactored the inputvector part of the som implementation
This commit is contained in:
@@ -20,8 +20,6 @@
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#include "SimilarityFeaturesSearcher.hpp"
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#include <random>
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#include <boost/property_tree/ptree.hpp>
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#include <boost/property_tree/xml_parser.hpp>
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#include "database/Artist.hpp"
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#include "database/SimilaritySettings.hpp"
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@@ -29,237 +27,82 @@
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#include "database/Track.hpp"
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#include "database/TrackFeatures.hpp"
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#include "som/DataNormalizer.hpp"
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#include "utils/Config.hpp"
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#include "utils/Logger.hpp"
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#include "utils/Utils.hpp"
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namespace Similarity {
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static
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boost::filesystem::path getCacheDirectory()
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struct FeatureInfo
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{
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return Config::instance().getPath("working-dir") / "cache" / "features";
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}
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static boost::filesystem::path getCacheNetworkFilePath()
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{
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return getCacheDirectory() / "network";
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std::size_t nbDimensions;
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double weight;
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};
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static boost::filesystem::path getCacheTrackPositionsFilePath()
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using FeatureInfoMap = std::map<std::string, FeatureInfo>;
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static
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FeatureInfoMap
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getFeatureInfoMap(Wt::Dbo::Session& session)
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{
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return getCacheDirectory() / "track_positions";
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Wt::Dbo::Transaction transaction {session};
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auto settings {Database::SimilaritySettings::get(session)};
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std::map<std::string, FeatureInfo> featuresInfo;
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for (auto feature : settings->getFeatures())
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{
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LMS_LOG(SIMILARITY, DEBUG) << "Feature '" << feature->getName() << "', nbDimns = " << feature->getNbDimensions() << ", weight = " << feature->getWeight() ;
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featuresInfo[feature->getName()] = { feature->getNbDimensions(), feature->getWeight() };
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}
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return featuresInfo;
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}
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static
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bool
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networkToCacheFile(const SOM::Network& network, boost::filesystem::path path)
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std::size_t
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getFeatureInfoMapNbDimensions(const FeatureInfoMap& featureInfoMap)
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{
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try
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{
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boost::property_tree::ptree root;
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root.put("width", network.getWidth());
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root.put("height", network.getHeight());
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root.put("dim_count", network.getInputDimCount());
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for (auto weight : network.getDataWeights())
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root.add("weights.weight", weight);
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for (SOM::Coordinate x = 0; x < network.getWidth(); ++x)
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{
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for (SOM::Coordinate y = 0; y < network.getWidth(); ++y)
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{
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const auto& refVector = network.getRefVector({x, y});
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boost::property_tree::ptree node;
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for (auto value : refVector)
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node.add("values.value", value);
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node.put("coord_x", x);
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node.put("coord_y", y);
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root.add_child("ref_vectors.ref_vector", node);
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}
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}
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boost::property_tree::write_xml(path.string(), root);
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LMS_LOG(SIMILARITY, DEBUG) << "Created network cache";
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return true;
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}
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catch (boost::property_tree::ptree_error& error)
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{
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LMS_LOG(SIMILARITY, ERROR) << "Cannot create network cache: " << error.what();
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return false;
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}
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return std::accumulate(featureInfoMap.begin(), featureInfoMap.end(), 0, [](std::size_t sum, auto it) { return sum + it.second.nbDimensions; });
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}
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static
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boost::optional<SOM::Network>
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createNetworkFromCacheFile(boost::filesystem::path path)
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{
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try
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{
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boost::property_tree::ptree root;
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boost::property_tree::read_xml(path.string(), root);
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auto width = root.get<double>("width");
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auto height = root.get<double>("height");
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auto dimCount = root.get<std::size_t>("dim_count");
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SOM::Network res(width, height, dimCount);
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SOM::InputVector weights;
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for (const auto& val : root.get_child("weights"))
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weights.push_back(val.second.get_value<double>());
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res.setDataWeights(weights);
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for (const auto& node : root.get_child("ref_vectors"))
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{
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auto x = node.second.get<SOM::Coordinate>("coord_x");
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auto y = node.second.get<SOM::Coordinate>("coord_y");
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std::vector<double> values;
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for (const auto& val : node.second.get_child("values"))
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values.push_back(val.second.get_value<double>());
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res.setRefVector({x, y}, values);
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}
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LMS_LOG(SIMILARITY, DEBUG) << "Successfully read network from cache";
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return res;
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}
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catch (boost::property_tree::ptree_error& error)
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{
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LMS_LOG(SIMILARITY, ERROR) << "Cannot read network cache: " << error.what();
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return boost::none;
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}
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}
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static
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bool
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objectPositionToCacheFile(const std::map<Database::IdType, std::set<SOM::Position>>& objectsPosition, boost::filesystem::path path)
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{
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try
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{
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boost::property_tree::ptree root;
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for (const auto& objectPosition : objectsPosition)
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{
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boost::property_tree::ptree node;
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node.put("id", objectPosition.first);
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for (const auto& position : objectPosition.second)
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{
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boost::property_tree::ptree positionNode;
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positionNode.put("x", position.x);
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positionNode.put("y", position.y);
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node.add_child("position.position", positionNode);
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}
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root.add_child("objects.object", node);
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}
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boost::property_tree::write_xml(path.string(), root);
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return true;
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}
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catch (boost::property_tree::ptree_error& error)
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{
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LMS_LOG(SIMILARITY, ERROR) << "Cannot cache object position: " << error.what();
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return false;
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}
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}
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static
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boost::optional<std::map<Database::IdType, std::set<SOM::Position>>>
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createObjectPositionsFromCacheFile(boost::filesystem::path path)
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{
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try
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{
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boost::property_tree::ptree root;
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boost::property_tree::read_xml(path.string(), root);
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std::map<Database::IdType, std::set<SOM::Position>> res;
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for (const auto& object : root.get_child("objects"))
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{
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auto id = object.second.get<Database::IdType>("id");
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for (const auto& position : object.second.get_child("position"))
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{
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auto x = position.second.get<SOM::Coordinate>("x");
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auto y = position.second.get<SOM::Coordinate>("y");
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res[id].insert({x, y});
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}
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}
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LMS_LOG(SIMILARITY, DEBUG) << "Successfully read object position from cache";
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return res;
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}
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catch (boost::property_tree::ptree_error& error)
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{
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LMS_LOG(SIMILARITY, ERROR) << "Cannot create object position from cache file: " << error.what();
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return boost::none;
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}
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}
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bool
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FeaturesSearcher::init(Wt::Dbo::Session& session, bool& stopRequested)
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FeaturesSearcher::FeaturesSearcher(Wt::Dbo::Session& session, bool& stopRequested)
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{
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Wt::Dbo::Transaction transaction(session);
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auto settings = Database::SimilaritySettings::get(session);
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FeatureInfoMap featuresInfo {getFeatureInfoMap(session)};
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std::size_t nbDimensions {getFeatureInfoMapNbDimensions(featuresInfo)};
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struct FeatureInfo
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{
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std::size_t nbDimensions;
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double weight;
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};
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std::map<std::string, FeatureInfo> featuresInfo;
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std::size_t nbDimensions = 0;
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for (auto feature : settings->getFeatures())
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{
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featuresInfo[feature->getName()] = { feature->getNbDimensions(), feature->getWeight() };
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nbDimensions += feature->getNbDimensions();
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}
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LMS_LOG(SIMILARITY, DEBUG) << "Features dimension = " << nbDimensions;
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LMS_LOG(SIMILARITY, DEBUG) << "Getting Tracks with features...";
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auto tracks = Database::Track::getAllWithFeatures(session);
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auto tracks {Database::Track::getAllWithFeatures(session)};
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LMS_LOG(SIMILARITY, DEBUG) << "Getting Tracks with features DONE";
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std::vector<SOM::InputVector> samples;
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std::vector<Database::IdType> tracksIds;
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LMS_LOG(SIMILARITY, DEBUG) << "Extracting features...";
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for (auto track : tracks)
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for (const Database::Track::pointer& track : tracks)
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{
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if (stopRequested)
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return false;
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return;
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SOM::InputVector sample;
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SOM::InputVector sample {nbDimensions};
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std::map<std::string, std::vector<double>> features;
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for (const auto& featureInfo : featuresInfo)
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features[featureInfo.first] = {};
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for (auto itFeatureInfo : featuresInfo)
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features[itFeatureInfo.first] = {};
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if (!track->getTrackFeatures()->getFeatures(features))
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continue;
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// Check dimensions for each feature
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bool ok = true;
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bool ok {true};
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std::size_t i {};
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for (const auto& feature : features)
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{
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auto it = featuresInfo.find(feature.first);
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// Check dimensions for each feature
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auto it {featuresInfo.find(feature.first)};
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if (it == featuresInfo.end() || it->second.nbDimensions != feature.second.size())
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{
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LMS_LOG(SIMILARITY, WARNING) << "Dimension mismatch for feature '" << feature.first << "'. Expected " << it->second.nbDimensions << ", got " << feature.second.size();
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@@ -267,7 +110,8 @@ FeaturesSearcher::init(Wt::Dbo::Session& session, bool& stopRequested)
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break;
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}
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sample.insert( sample.end(), feature.second.begin(), feature.second.end() );
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for (double val : feature.second)
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sample[i++] = val;
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}
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if (!ok)
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@@ -283,7 +127,7 @@ FeaturesSearcher::init(Wt::Dbo::Session& session, bool& stopRequested)
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if (tracksIds.empty())
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{
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LMS_LOG(SIMILARITY, INFO) << "Nothing to classify!";
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return false;
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return;
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}
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LMS_LOG(SIMILARITY, DEBUG) << "Normalizing data...";
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@@ -293,17 +137,21 @@ FeaturesSearcher::init(Wt::Dbo::Session& session, bool& stopRequested)
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for (auto& sample : samples)
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dataNormalizer.normalizeData(sample);
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std::size_t size = std::sqrt(samples.size()/2);
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LMS_LOG(SIMILARITY, INFO) << "Found " << samples.size() << " tracks, constructing a " << size << "*" << size << " network";
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std::vector<double> weights;
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for (const auto& featureInfo : featuresInfo)
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SOM::InputVector weights {nbDimensions};
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{
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for (std::size_t i = 0; i < featureInfo.second.nbDimensions; ++i)
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weights.push_back(1. / featureInfo.second.nbDimensions * featureInfo.second.weight);
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std::size_t index {};
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for (const auto& featureInfo : featuresInfo)
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{
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for (std::size_t i {}; i < featureInfo.second.nbDimensions; ++i)
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weights[index++] = (1. / featureInfo.second.nbDimensions * featureInfo.second.weight);
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}
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}
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SOM::Network network(size, size, nbDimensions);
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SOM::Coordinate size {static_cast<SOM::Coordinate>(std::sqrt(samples.size() / 4))};
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LMS_LOG(SIMILARITY, INFO) << "Found " << samples.size() << " tracks, constructing a " << size << "*" << size << " network";
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SOM::Network network {size, size, nbDimensions};
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std::cout << "Weights = '" << weights << "'";
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network.setDataWeights(weights);
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auto progressIndicator{[](const auto& iter)
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@@ -314,116 +162,100 @@ FeaturesSearcher::init(Wt::Dbo::Session& session, bool& stopRequested)
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auto stopper{[&]() { return stopRequested; }};
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LMS_LOG(SIMILARITY, DEBUG) << "Training network...";
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network.train(samples, 1, progressIndicator, stopper);
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network.train(samples, 10, progressIndicator, stopper);
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LMS_LOG(SIMILARITY, DEBUG) << "Training network DONE";
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if (stopRequested)
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return false;
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return;
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LMS_LOG(SIMILARITY, DEBUG) << "Classifying tracks...";
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std::map<Database::IdType, std::set<SOM::Position>> trackPosition;
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for (std::size_t i = 0; i < samples.size(); ++i)
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std::map<Database::IdType, std::set<SOM::Position>> trackPositions;
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for (std::size_t i {}; i < samples.size(); ++i)
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{
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if (stopRequested)
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return false;
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return;
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Wt::Dbo::Transaction transaction(session);
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Wt::Dbo::Transaction transaction {session};
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const auto& sample = samples[i];
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auto trackId = tracksIds[i];
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auto position = network.getClosestRefVectorPosition(sample);
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trackPosition[trackId].insert(position);
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trackPositions[trackId].insert(position);
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}
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LMS_LOG(SIMILARITY, DEBUG) << "Classifying tracks DONE";
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init(session, std::move(network), std::move(trackPosition));
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init(session, std::move(network), std::move(trackPositions));
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}
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saveToCache();
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FeaturesSearcher::FeaturesSearcher(Wt::Dbo::Session& session, FeaturesCache cache)
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{
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init(session, std::move(cache._network), std::move(cache._trackPositions));
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return true;
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LMS_LOG(SIMILARITY, DEBUG) << "Init from cache DONE";
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}
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bool
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FeaturesSearcher::initFromCache(Wt::Dbo::Session& session)
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FeaturesSearcher::isValid() const
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{
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auto network{createNetworkFromCacheFile(getCacheNetworkFilePath())};
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if (!network)
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{
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clearCache();
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return false;
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}
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auto trackPositions{createObjectPositionsFromCacheFile(getCacheTrackPositionsFilePath())};
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if (!trackPositions)
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{
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clearCache();
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return false;
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}
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init(session, std::move(*network), std::move(*trackPositions));
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LMS_LOG(SIMILARITY, DEBUG) << "Init from cache OK";
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return true;
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}
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void
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FeaturesSearcher::invalidateCache()
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{
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boost::filesystem::remove(getCacheNetworkFilePath());
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boost::filesystem::remove(getCacheTrackPositionsFilePath());
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return _network.get() != nullptr;
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}
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std::vector<Database::IdType>
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FeaturesSearcher::getSimilarTracks(const std::set<Database::IdType>& tracksIds, std::size_t maxCount) const
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{
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return getSimilarObjects(tracksIds, _tracksMap, _trackPosition, maxCount);
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return getSimilarObjects(tracksIds, _tracksMap, _trackPositions, maxCount);
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}
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std::vector<Database::IdType>
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FeaturesSearcher::getSimilarReleases(Database::IdType releaseId, std::size_t maxCount) const
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{
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return getSimilarObjects({releaseId}, _releasesMap, _releasePosition, maxCount);
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return getSimilarObjects({releaseId}, _releasesMap, _releasePositions, maxCount);
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}
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std::vector<Database::IdType>
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FeaturesSearcher::getSimilarArtists(Database::IdType artistId, std::size_t maxCount) const
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{
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return getSimilarObjects({artistId}, _artistsMap, _artistPosition, maxCount);
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return getSimilarObjects({artistId}, _artistsMap, _artistPositions, maxCount);
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}
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void
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FeaturesSearcher::dump(Wt::Dbo::Session& session, std::ostream& os) const
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{
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os << "Number of tracks classified: " << _trackPosition.size() << std::endl;
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os << "Network size: " << _network.getWidth() << " * " << _network.getHeight() << std::endl;
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if (!isValid())
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{
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os << "Invalid searcher" << std::endl;
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return;
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}
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os << "Number of tracks classified: " << _trackPositions.size() << std::endl;
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os << "Network size: " << _network->getWidth() << " * " << _network->getHeight() << std::endl;
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os << "Ref vectors median distance = " << _networkRefVectorsDistanceMedian << std::endl;
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Wt::Dbo::Transaction transaction(session);
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for (SOM::Coordinate y = 0; y < _network.getHeight(); ++y)
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for (SOM::Coordinate y {}; y < _network->getHeight(); ++y)
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{
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for (SOM::Coordinate x = 0; x < _network.getWidth(); ++x)
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for (SOM::Coordinate x {}; x < _network->getWidth(); ++x)
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{
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const auto& trackIds = _tracksMap[{x, y}];
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const auto& trackIds {_tracksMap[{x, y}]};
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os << "{" << x << ", " << y << "}";
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if (y > 0)
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os << " - {" << x << ", " << y - 1 << "}: " << _network.getRefVectorsDistance({x, y}, {x, y - 1});
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os << " - {" << x << ", " << y - 1 << "}: " << _network->getRefVectorsDistance({x, y}, {x, y - 1});
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if (x > 0)
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os << " - {" << x - 1 << ", " << y << "}: " << _network.getRefVectorsDistance({x, y}, {x - 1, y});
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if (y != _network.getHeight() - 1)
|
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os << " - {" << x << ", " << y + 1 << "}: " << _network.getRefVectorsDistance({x, y}, {x, y + 1});
|
||||
if (x != _network.getWidth() - 1)
|
||||
os << " - {" << x + 1 << ", " << y << "}: " << _network.getRefVectorsDistance({x, y}, {x + 1, y});
|
||||
os << " - {" << x - 1 << ", " << y << "}: " << _network->getRefVectorsDistance({x, y}, {x - 1, y});
|
||||
if (y != _network->getHeight() - 1)
|
||||
os << " - {" << x << ", " << y + 1 << "}: " << _network->getRefVectorsDistance({x, y}, {x, y + 1});
|
||||
if (x != _network->getWidth() - 1)
|
||||
os << " - {" << x + 1 << ", " << y << "}: " << _network->getRefVectorsDistance({x, y}, {x + 1, y});
|
||||
os << std::endl;
|
||||
|
||||
for (auto trackId : trackIds)
|
||||
for (Database::IdType trackId : trackIds)
|
||||
{
|
||||
auto track = Database::Track::getById(session, trackId);
|
||||
auto track {Database::Track::getById(session, trackId)};
|
||||
if (!track)
|
||||
continue;
|
||||
|
||||
@@ -440,48 +272,52 @@ FeaturesSearcher::dump(Wt::Dbo::Session& session, std::ostream& os) const
|
||||
}
|
||||
}
|
||||
|
||||
FeaturesCache
|
||||
FeaturesSearcher::toCache() const
|
||||
{
|
||||
return FeaturesCache{*_network, _trackPositions};
|
||||
}
|
||||
|
||||
void
|
||||
FeaturesSearcher::init(Wt::Dbo::Session& session,
|
||||
SOM::Network network,
|
||||
std::map<Database::IdType, std::set<SOM::Position>> tracksPosition)
|
||||
{
|
||||
_network = std::move(network);
|
||||
|
||||
_networkRefVectorsDistanceMedian = _network.computeRefVectorsDistanceMedian();
|
||||
_network = std::make_unique<SOM::Network>(std::move(network));
|
||||
_networkRefVectorsDistanceMedian = _network->computeRefVectorsDistanceMedian();
|
||||
LMS_LOG(SIMILARITY, DEBUG) << "Median distance betweend ref vectors = " << _networkRefVectorsDistanceMedian;
|
||||
|
||||
auto width = _network.getWidth();
|
||||
auto height = _network.getHeight();
|
||||
SOM::Coordinate width {_network->getWidth()};
|
||||
SOM::Coordinate height {_network->getHeight()};
|
||||
|
||||
_artistsMap = SOM::Matrix<std::set<Database::IdType>>(width, height);
|
||||
_releasesMap = SOM::Matrix<std::set<Database::IdType>>(width, height);
|
||||
_tracksMap = SOM::Matrix<std::set<Database::IdType>>(width, height);
|
||||
|
||||
Wt::Dbo::Transaction transaction(session);
|
||||
Wt::Dbo::Transaction transaction {session};
|
||||
|
||||
for (auto itTrackCoord : tracksPosition)
|
||||
{
|
||||
auto trackId = itTrackCoord.first;
|
||||
const auto& positionSet = itTrackCoord.second;
|
||||
Database::IdType trackId {itTrackCoord.first};
|
||||
const std::set<SOM::Position>& positionSet {itTrackCoord.second};
|
||||
|
||||
auto track = Database::Track::getById(session, trackId);
|
||||
auto track {Database::Track::getById(session, trackId)};
|
||||
if (!track)
|
||||
continue;
|
||||
|
||||
for (const auto& position : positionSet)
|
||||
for (const SOM::Position& position : positionSet)
|
||||
{
|
||||
_tracksMap[position].insert(trackId);
|
||||
_trackPosition[trackId].insert(position);
|
||||
_trackPositions[trackId].insert(position);
|
||||
|
||||
if (track->getRelease())
|
||||
{
|
||||
_releasePosition[track->getRelease().id()].insert(position);
|
||||
_releasePositions[track->getRelease().id()].insert(position);
|
||||
_releasesMap[position].insert(track->getRelease().id());
|
||||
}
|
||||
if (track->getArtist())
|
||||
{
|
||||
_artistPosition[track->getArtist().id()].insert(position);
|
||||
_artistPositions[track->getArtist().id()].insert(position);
|
||||
_artistsMap[position].insert(track->getArtist().id());
|
||||
}
|
||||
}
|
||||
@@ -491,25 +327,6 @@ FeaturesSearcher::init(Wt::Dbo::Session& session,
|
||||
|
||||
}
|
||||
|
||||
void
|
||||
FeaturesSearcher::saveToCache() const
|
||||
{
|
||||
if (!networkToCacheFile(_network, getCacheNetworkFilePath())
|
||||
|| !objectPositionToCacheFile(_trackPosition, getCacheTrackPositionsFilePath()))
|
||||
{
|
||||
LMS_LOG(SIMILARITY, ERROR) << "Failed cache data";
|
||||
clearCache();
|
||||
}
|
||||
}
|
||||
|
||||
void
|
||||
FeaturesSearcher::clearCache() const
|
||||
{
|
||||
for (boost::filesystem::directory_iterator itEnd, it(getCacheDirectory()); it != itEnd; ++it)
|
||||
boost::filesystem::remove_all(it->path());
|
||||
}
|
||||
|
||||
|
||||
static
|
||||
std::set<SOM::Position>
|
||||
getMatchingRefVectorsPosition(const std::set<Database::IdType>& ids, const std::map<Database::IdType, std::set<SOM::Position>>& objectPosition)
|
||||
@@ -555,16 +372,19 @@ FeaturesSearcher::getSimilarObjects(const std::set<Database::IdType>& ids,
|
||||
{
|
||||
std::vector<Database::IdType> res;
|
||||
|
||||
auto now = std::chrono::system_clock::now();
|
||||
std::mt19937 randGenerator(std::chrono::duration_cast<std::chrono::milliseconds>(now.time_since_epoch()).count());
|
||||
if (!isValid())
|
||||
return res;
|
||||
|
||||
std::set<SOM::Position> searchedRefVectorsPosition = getMatchingRefVectorsPosition(ids, objectPosition);
|
||||
auto now {std::chrono::system_clock::now()};
|
||||
std::mt19937 randGenerator{static_cast<std::mt19937::result_type>(std::chrono::duration_cast<std::chrono::milliseconds>(now.time_since_epoch()).count())};
|
||||
|
||||
std::set<SOM::Position> searchedRefVectorsPosition {getMatchingRefVectorsPosition(ids, objectPosition)};
|
||||
if (searchedRefVectorsPosition.empty())
|
||||
return res;
|
||||
|
||||
while (1)
|
||||
{
|
||||
std::set<Database::IdType> closestObjectIds = getObjectsIds(searchedRefVectorsPosition, objectsMap);
|
||||
std::set<Database::IdType> closestObjectIds {getObjectsIds(searchedRefVectorsPosition, objectsMap)};
|
||||
|
||||
// Remove objects that are already in input or already reported
|
||||
for (auto id : ids)
|
||||
@@ -574,8 +394,7 @@ FeaturesSearcher::getSimilarObjects(const std::set<Database::IdType>& ids,
|
||||
closestObjectIds.erase(id);
|
||||
|
||||
{
|
||||
std::vector<Database::IdType> objectIdsToAdd(closestObjectIds.begin(), closestObjectIds.end());
|
||||
|
||||
std::vector<Database::IdType> objectIdsToAdd {closestObjectIds.begin(), closestObjectIds.end()};
|
||||
std::shuffle(objectIdsToAdd.begin(), objectIdsToAdd.end(), randGenerator);
|
||||
std::copy(objectIdsToAdd.begin(), objectIdsToAdd.end(), std::back_inserter(res));
|
||||
}
|
||||
@@ -587,7 +406,7 @@ FeaturesSearcher::getSimilarObjects(const std::set<Database::IdType>& ids,
|
||||
break;
|
||||
|
||||
// If there is not enough objects, try again with closest neighbour until there is too much distance
|
||||
auto closestRefVectorPosition = _network.getClosestRefVectorPosition(searchedRefVectorsPosition, _networkRefVectorsDistanceMedian * 0.75);
|
||||
boost::optional<SOM::Position> closestRefVectorPosition {_network->getClosestRefVectorPosition(searchedRefVectorsPosition, _networkRefVectorsDistanceMedian * 0.75)};
|
||||
if (!closestRefVectorPosition)
|
||||
break;
|
||||
|
||||
|
||||
Reference in New Issue
Block a user