/*
* Copyright (C) 2018 Emeric Poupon
*
* This file is part of LMS.
*
* LMS is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* LMS is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with LMS. If not, see .
*/
#include "som/DataNormalizer.hpp"
#include
#include
#include
namespace SOM
{
template
static
T
variance(const std::vector& vec)
{
std::size_t size {vec.size()};
if (size == 1)
return T {};
const T mean {std::accumulate(vec.begin(), vec.end(), T{}) / size};
return std::accumulate(vec.begin(), vec.end(), T {},
[mean, size] (T accumulator, const T& val)
{
return accumulator + ((val - mean) * (val - mean) / (size - 1));
});
}
DataNormalizer::DataNormalizer(std::size_t inputDimCount)
: _inputDimCount{inputDimCount}
{
}
const DataNormalizer::MinMax&
DataNormalizer::getValue(std::size_t index) const
{
return _minmax[index];
}
void
DataNormalizer::setValue(std::size_t index, const MinMax& minMax)
{
_minmax[index] = minMax;
}
void
DataNormalizer::computeNormalizationFactors(const std::vector& inputVectors)
{
if (inputVectors.empty())
throw Exception("Empty input vectors");
// For each dimension of the input, compute the min/max
_minmax.clear();
_minmax.resize(_inputDimCount);
for (std::size_t dimId {}; dimId < _inputDimCount; ++dimId)
{
std::vector values;
for (const auto& inputVector: inputVectors)
{
checkSameDimensions(inputVector, _inputDimCount);
values.push_back(inputVector[dimId]);
}
auto result {std::minmax_element(values.begin(), values.end())};
_minmax[dimId] = {*result.first, *result.second};
}
}
InputVector::value_type
DataNormalizer::normalizeValue(InputVector::value_type value, std::size_t dimId) const
{
// clamp
if (value > _minmax[dimId].max)
value = _minmax[dimId].max;
else if (value < _minmax[dimId].min)
value = _minmax[dimId].min;
return (value - _minmax[dimId].min) / (_minmax[dimId].max - _minmax[dimId].min);
}
void
DataNormalizer::normalizeData(InputVector& a) const
{
checkSameDimensions(a, _inputDimCount);
for (std::size_t dimId {}; dimId < _inputDimCount; ++dimId)
{
a[dimId] = normalizeValue(a[dimId], dimId);
}
}
void
DataNormalizer::dump(std::ostream& os) const
{
for (std::size_t i {}; i < _inputDimCount; ++i)
os << "(" << _minmax[i].min << ", " << _minmax[i].max << ")";
}
} // namespace SOM